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Senior System Engineer

Roche Holdings Inc.
$92,000 -$172,000
United States, California, Santa Clara
2801 Scott Boulevard (Show on map)
Sep 27, 2025

At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases and ensure everyone has access to healthcare today and for generations to come. Join Roche, where every voice matters.

The Position

Roche Sequencing Solutions is developing nanopore based sequencing dedicated to making clinical genetic testing easy and affordable. We are developing a revolutionary, low cost, single-molecule DNA sequencer that can potentially improve the lives of people in a wide variety of ways including timely screening for diseases and diagnosis of various cancers.

Roche is looking for a motivated and team-oriented individual who is passionate about revolutionary sequencing technology. The Senior Integration Systems Engineer will become a technology integration expert on the operation, theory, and data analysis from the new Roche Nanopore Sequencing platform. This person will help take the chemistry, instrument, consumable device, and software from an advanced proof of concept to an operational laboratory instrument.

Drawing on experience in systems, bioengineering and/or biochemistry, the Senior System Engineer for the Integration Team will design and implement experiments on the Roche sequencer and will help integrate chemistry advances, microfluidic consumable device improvements, and instrument interface and process changes. The candidate will analyze and present experimental results around quality, variability, and robustness of the entire system and work collaboratively across multiple teams. The candidate must be self-motivated, detail-oriented, and able to work well in a team.

The Opportunity:

  • You will investigate, troubleshoot, and conduct failure analysis in a fast-paced environment

  • You will debug chemistry, instrumentation, consumable device, and software issues to create a robust platform

  • you will design, implement, and analyze sequencing results of various process changes and operating parameters

  • You will contribute to the creation of instrument operating protocols for functional testing

  • You will become an expert on the operation of the Roche Sequencing Platform

  • You will accurately and consistently record experimental method, materials, and results for daily tasks

  • You will understand and apply statistical methods, design of experiments, and/or process control monitoring techniques

Who You Are:
(Required)

  • You have a Bachelor's in bioengineering, biochemistry, chemistry, or a related discipline with a background in instrumentation and 5+ years of experience; or you have a Master's in bioengineering, biochemistry, chemistry, or a related discipline with a background in instrumentation and 3 years of experience

  • You have integration experience

  • You have demonstrated experience troubleshooting (experimental, hardware, software, reagents) and problem solving skills, along with experimental design experience

  • You have meticulous attention to detail and excellent written and electronic record keeping skills; strong oral and written communication skills; you are self-motivated and able to work well in a team as well as cross functionally

  • You have experience with statistical data analysis using JMP, Python or R

Preferred:

  • You have various programming experience

  • You have an understanding of DNA manipulation techniques, sequencing methodologies, and microfluidics is a plus

This is an on-site position based in Santa Clara, CA.

Relocation benefits are not being offered for this role.

The expected salary range for this position based on the primary location of Santa Clara, CA is $92,000 -$172,000. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance.

This position also qualifies for the benefits detailed at the link provided below.

Benefits

#RSS2025

Who we are

A healthier future drives us to innovate. Together, more than 100'000 employees across the globe are dedicated to advance science, ensuring everyone has access to healthcare today and for generations to come. Our efforts result in more than 26 million people treated with our medicines and over 30 billion tests conducted using our Diagnostics products. We empower each other to explore new possibilities, foster creativity, and keep our ambitions high, so we can deliver life-changing healthcare solutions that make a global impact.

Let's build a healthier future, together.

Roche is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.

If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants.

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